Changes in version 1.2.1 (2024-08-28)                  

  - fix type for integer in C header file

                 Changes in version 1.2.0 (2024-08-27)                  

  - update tolerance value for mvgls tuning parameter search
      - changes to Fortran routines calls following CRAN policies
      - wrapper to BIC

                 Changes in version 1.1.9 (2023-12-09)                  

  - reverse change for zero branch lengths in "penalized" file. A typo
    was introduced. Now a check is performed first in the "mvgls"
    function.

                 Changes in version 1.1.8 (2023-11-29)                  

  - add the pcaShape and dfaShape functions
      - add wrapper "simulate()" to simulate from 'mvgls' or 'mvols' fit
      - fix error in "estim" for BM with trend
      - fix issues with zero branch lengths in the pruning algorithm
        used in 'mvgls'
      - fix typo on factor labels in DFA predictions
      - fix CRAN requests (typo on Rd file and arguments in error
        function in C code)

                 Changes in version 1.1.7 (2023-03-13)                  

  - fix error in handling pairwise glh tests with the "effectSize"
    function
      - fix error in mvols with EIC - no use of the pruning algorithm
        now
      - add ploting option for pairwise tests
      - add AIC extractor

                 Changes in version 1.1.6 (2022-05-09)                  

  - fix error in the estimation of GIC with "BMM" model in mvgls. Now
    the 'mvgls' function uses a more robust parameterization of BMM
    which ease the computation of GIC.
      - mvols function - wrapper to mvgls to fit OLS (or WLS)
        multivariate models (possibly regularized)

                 Changes in version 1.1.5 (2022-05-02)                  

  - mvqqplot (multivariate normality and outliers assessment - beta)
      - effectsize (multivariate measures of association - beta)
      - pairs.contrasts (build a matrix of pairwise contrasts)
      - pairwise.glh (performs multivariate pairwises tests)
      - predict.mvgls.dfa (predict option for DFA - beta)
      - manova.gls (implements now contrasts for repeated measures
        designs)
      - fix error in estim
      - add "ancestral" function to estimate ancestral states for mvgls
        objects

                 Changes in version 1.1.4 (2021-03-17)                  

  - model BMM in mvgls
      - "predict" function for mvgls
      - plot function for mvgls objects
      - dfa on gls fit (beta)
      - fix typo in mvSHIFT output print
      - fix error in estimation of OU with n-ultrametric trees in mvgls
        + new adjusted bounds for parameters search
      - fix typo in summary.mvgls print option in the calculation of the
        AIC.
      - handling of design matrices with deficient ranks in regressions

                 Changes in version 1.1.3 (2020-06-12)                  

  - CRAN request to remove the export statements for S3 classes
      - replace is.binary.tree to is.binary.phylo, the former being
        deprecated from "ape".
      - fix error in mvSHIFT. The wrong values were returned (but not
        printed) for "beta" in BMEB models.

                 Changes in version 1.1.2 (2020-04-17)                  

  - replaced "F" by "FALSE" in example files to follow CRAN policies
      - optimization of some diagonal matrices computations
      - bug fix in mvSIM (SHIFT model without simmap tree provided)

                 Changes in version 1.1.1 (2020-01-08)                  

  - update help pages of various functions
      - Bugs fixes for bounds in the parameter search in "mvgls", and
        missing values estimation in "estim" with OU1 model.
      - manova.gls: MANOVA methods and multivariate statistics based on
        ML (n<p) and PL (any p) model fit.
      - Phyllostomid dataset from Monteiro & Nogueira (2011)
      - EIC: function to compute the EIC score for both ML and PL
        techniques (class mvgls)

                 Changes in version 1.1.0 (2018-08-04)                  

  - mvgls: a multivariate GLS function based on ML (n<p) and PL (any p).
      - mvgls.pca: a function to perform PCA on serially correlated
        data.
      - GIC: function to compute the GIC score for both ML and PL
        techniques (class mvgls)
      - suite of functions to use with mvgls
      - Bug fix for "mvSIM" with sparse methods and speed-up for "BM1"
        model.
      - Typo fix in testLRT
      - Typo fix in weight-matrix-mvmorph.c (indexing of variable)
      - add options for the pruning algorithm.
      - fix error with NA values for the mvOU function.

                 Changes in version 1.0.9 (2017-06-08)                  

  - Registration of compiled codes
      - New pruning algorithm to compute the determinant and square root
        matrix
      - Bugs fixes in "estim" for ancestral state reconstructions with
        OU models and "smean=FALSE" option.
      - Bug fix for "estim" with univariate data.
      - Corrected bug in mvSIM.
      - Fix bug with matrix parametrization "equaldiagonal".
      - add the "svd" option for simulating traits in mvSIM.
      - Bug fix in "mvEB".

                 Changes in version 1.0.8 (2016-10-25)                  

  - Allows estimating the missing cases (NA)
      - Allows estimating trends
      - User defined constrained models and parameterizations
      - Return the log-likelihood function
      - Simulating traits on package vignette
      - Multivariate models for time-series (TS)
      - Partial implementation of a tests-suite