Trees and Time series | Phylogenetic trees | Time series | Data and Errors | Simulating data | Optimization methods | Likelihood computation methods | error - X X X X X | Multivariate GLS models and High-Dimensional datasets | Model comparison | Treatment of the root | Ancestral state and primary optimum | Multiple phylogenetic means | Directional trends | Constraints | Overview of the various constraint parameterizations in mvMORPH | "User-defined" constraints | The "param" list | The "decomp" and "decompSigma" options | the "vcv" argument | Functions | The loglikelihood function | The matrix parameterization functions | Fossil data | Overview of the functions | Imputing missing values | Ancestral state reconstructions | Tweak mvMORPH | Make your own model! | Reuse of the returned log-likelihood functions | Bayesian mcmc

Example 1: Models with distinct selective regimes | Type I 0.213 0.22 | Example 2: Tests for evolutionary correlations between two species groups | References: